PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_097BADCFE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 343aa    MW: 37729.4 Da    PI: 6.8756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_097BADCFE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.7e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT eEde+l+  ++++G g+W++ +++ g+ R++k+c++rw +yl
  Traes_2AL_097BADCFE.1 14 KGPWTSEEDEKLLAHIEEHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61
                           79********************************************97 PP

2Myb_DNA-binding506.9e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++ +E++ +++++++lG++ W++Ia ++  +Rt++++k++w+++l
  Traes_2AL_097BADCFE.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLS-RRTDNEIKNYWNTHL 112
                            89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.474961IPR017930Myb domain
SuperFamilySSF466892.64E-2911108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002494.5E-151461IPR001005SANT/Myb domain
CDDcd001676.81E-111661No hitNo description
PROSITE profilePS5129425.18962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2565116IPR009057Homeodomain-like
SMARTSM007172.6E-1566114IPR001005SANT/Myb domain
PfamPF002496.5E-1567112IPR001005SANT/Myb domain
CDDcd001672.04E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTSE EDEKLLAHIE EHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLSRRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKATN GAPVGTAASL NHMAQWESAR LEAEGRLARE SRMRTAASTP TSIPLHPINL  180
PEPTTPPCLG MLQPWQGAKL DLESPTSTLT FIGNNNSVSL GASESNSAMW KLRSDDPECE  240
ENSVHKFLRE QQMQGLEGEE RGRHIIGCEE PWFQGTVGVG AGFTDMLHDA LDCWGESSNG  300
QAELSGQVSG DGESGSSSYW SGILGMVVTS ELPPSHPHPP AFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486510.0AK248651.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf180h20, mRNA sequence.
GenBankAK3583250.0AK358325.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1073M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574525.11e-179PREDICTED: myb-related protein Myb4-like
TrEMBLW5AP970.0W5AP97_WHEAT; Uncharacterized protein
STRINGBRADI3G36660.11e-178(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-103myb domain protein 16
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]